Quote: No the AF will not work with a Canon 2x extender on a 40D or 5D with this lens. ( effective aperture smaller than F5.6 )
The 1.4x will have an AF issue too as the 100-400 L is f/5.6 at the tele end.... and I can't see the point of using an extender at all unless you have the trombone extended.
Quote: Some Canon extender users tape or varnish three of the pins on the converter to enable AF.
Note that this slows the AF down so much you can probably forget about it for action shots.
However perhaps you could prefocus (manually, or with slow AF) & take the shot as the subject goes through the plane you've focused on.